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Statistical Bioinformatics

Data

This page gives links to publicly available microarray data.

• Alliance for Cellular Signaling (AfCS) Data Center. The Signaling Gateway, Nature Publishing.
• ArrayExpress. European Bioinformatics Institute.
• Critical Assessment of Microarray Data (CAMDA). An annual conference incorporating a data analysis contest. Duke University.
• Institute for Genomic Research's Program for Genomic Application. Follow the link to 'Data'.
• Gene Expression Omnibus (GEO). A curated, online resource for gene expression data browsing, query and retrieval. NCBI.
• Microarray Gene Expression Database Group. An open discussion group with the goal of facilitating the adoption of standards for DNA-array experiment annotation and data representation, as well as the introduction of standard experimental controls and data normalisation methods.
• Pevsner Laboratory Microarray Data. Repository of data associated with published papers.
• Stanford Genomic Resources. Department of Genetics, Stanford University.
  • Stanford Microarray Database (SMD). A large database which includes many data sets corresponding to well-known published papers. Includes functionality to do comparisons and meta-analyses across experiments.
• UPITT Cancer Gene Expression Data Set Link Database. University of Pittsburgh, Benedum Oncology Informatics Center.

• Tab2MAGE. A software package in perl by the ArrayExpress curation team to ease the process of submitting large microarray experiment datasets to ArrayExpress. Supports a wide variety of image analysis output formats.