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Microarray Data Analysis

Research Groups

This is a (admittedly out of data) list of statistical bioinformatics research groups known to me.

Australia

• WEHI: Bioinformatics. The microarray research group includes Terry Speed, Gordon Smyth, Ken Simpson, Alicia Oshlack, James Wettenhall and students. Walter and Eliza Hall Institute, Melbourne, Australia.
• Adelaide: Microarray Analysis Group. Led by Patty Solomon including Anna Tsykin and Gary Glonek. Department of Applied Mathematics, University of Adelaide, Australia.
• Australian National University: Centre for Bioinformation Science. Includes Sue Wilson and John Maindonald and students.
• CSIRO: Bioinformatics.
• Victorian Bioinformatics Consortium.

United States

• Alabama: Section on Statistical Genetics. Department of Biostatistics, University of Alabama at Birmingham.
• Duke: DNA Microarray Center. Includes Mike West and Ed Iversen in the Institute of Statistics and Decision Sciences, Duke University.
• Fred Hutchinson Cancer Research Center: Charles Kooperberg.
• Harvard: Wong Lab. Includes Wing Hung Wong, postdocs and students. Department of Biostatistics, Harvard School of Public Health.
• Jax: Gary Churchill's Statistical Genetics Group. Jackson Laboratory, Maine.
• Johns Hopkins: Hopkins Expressionists. Interdisciplinary group developing methods for SAGE and microarray experiments including Giovanni Parmigiani and Rafael Irizarry. Johns Hopkins University.
• Minnesota: Statistical Analysis of Microarray Data. Wei Pan, Department of Biostatistics, University of Minnesota.
• NIH: Analytic Biostatistics Section, National Institutes of Health.
• Stanford: Laboratory for Statistical Analysis of Microarray Data. Stanford University group co-ordinated by Rob Tibshirani including Trevor Hastie, Art Owen, Laura Lazzeroni and students.
• UC Berkeley: Terry Speed's Microarray Data Analysis Group. Includes Terry Speed, collaborators and students. University of California, Berkeley. Also Sandrine Dudoit, Biostatistics.
• UC San Francisco Core Facilities Analysis Team.
• Washington: John Storey, Biostatistics.
• Whitehead: Trey Ideker Laboratory. Whitehead Institute, Cambridge, Massachusetts.
• Wisconsin: Gene Expression Data Analysis. Includes Brian Yandell, Kam Tsui, Michael Newton, Christina Kendziorski and Bob Mau. Department of Biostatistics and Medical Informatics. University of Wisconsin, Madison.

Europe

• Glasgow: Bioinformatics Initiative Glasgow. Group co-ordinated by Ernst Wit. Includes some online normalisation and analysis facilities using RWeb. Department of Statistics, University of Glasgow.
• DKFZ: Theoretical Bioinformatics. German Cancer Research Center, Heidelberg.
  • Benedikt Brors. Includes extensive links.
  • Tim Beißbarth. Includes online analysis facility using Matlab.
• Max Planck: Computational Diagnostics. Group led by Rainer Spang. Max Planck Institute for Molecular Genetics, Berlin.