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Statistical Bioinformatics
Microarray Image Analysis Software
Institutions or companies which produce scanning or image analysis software
for spotted DNA microarray slides.
- Alpha Innotech Corporation.
Produce the AlphaArray microarray reader and associated software.
-
Amersham Biosciences. Produce ArrayVision and ArrayStat software.
- Analytic Biostatistics Section, National
Institutes of Health. Produce the P-Scan and F-Scan software written in
MATLAB for capturing microarray images. Follow the link for "gene expression".
Data on spot intensities is passed out to JMP for further statistical
analysis.
- Applied Precision. Produce the ArrayWoRX
microarray scanner and associated software.
- BioDiscovery. Produce Imagene
and GeneSight software.
- BlueGnome. Produce
BlueFuse software. A Bayesian model is used to generate a confidence measure
for each spot.
- Eisen Lab, Lawrence Berkeley National Lab.
Produce ScanAlyze image analysis software. Also Cluster and TreeView software
for cluster analysis and GMEP software for expression profile analysis.
- Genomic Solutions. Produce
the GeneTac scanner and associated software.
- GridGrinder. Corning Incorporated released GridGrinder
as open source under the BSD license in 2002.
- GSI Lumonics. Formerly produced QuantArray
software now sold to Packard Bioscience.
- Image Analysis Group, CSIRO.
Produce Spot software. Spot builds upon more than a decade of image analysis
work by Australian CSIRO scientists. At this time we believe it to do the best
job of image analysis for microarray slides.
- Imaxia. Produce ArrayFox software.
30-day trial available.
- INRA (French
National Institute for Agricultural Research) Toulouse. Produce AGScan
software. GNU General Public License.
- Institut Curie. Produce MAIA
software for automatic processing of one and two colour images produced in
spotted DNA microarray experiments.
- Jain Lab, Cancer Center,
University of California, San Fransisco. Produce UCSF Spot for Windows.
Free for academic use.
- Jeremy Buhler,
Washington University of St Louis. Author of Dapple software. Free
software.
- Koada Technology. Produce Koadarray
software for automated analysis and quantification of microarray images.
- MediaCybernetics. Produce Image-Pro
Plus software.
- Molecular Devices. Produce the GenePix image
scanner and associated software.
- GenePix
Pro. Guides to ATF (Axon Text File), GAL (GenePix Array List), GPR (GenePix
Results) and
other files formats.
- Molecular
Neuroscience Core, Center for Behavioral Neuroscience, Atlanta. Producers
of GLEAM software.
- MolecularWare. Produced Digital Genome microarray scanning software, but now appears to
be defunct. Website is not operational.
-
NHGRI Microarray Project. Produce the ArraySuite Software Package, a
collection of IPLab extensions for the Macintosh computer.
- Nutec Sciences. Produce GLEAMS
software, but there is no mention of this on their www page.
- PerkinElmer Life Sciences. Produce ScanArray scanners and QuantArray software.
- Raytest. Produce AIDA software.
- ScanAlytics. Produce Scanalytics
MicroArray Suite software including the DeArray module.
- TIGR: The Institute for Genomic Research.
Produce SpotFinder software.
- Virtek Vision International Inc.
Produce Virtek ChipReader software.