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Microarray Data Analysis

Older Links

Many of these links are no longer the latest, so this page is just for occasional reference.

Clone Libraries

• Compugen OligoLibraries.

Microarray Technologies

• Spotted cDNA. Suitable for home-made arrays.
• Spotted long oligo. Suitable for home-made arrays.
• Agilent
• Applied Biosystems.
• Millennium Science. Affymetrix suppliers for Australia.

Affymetrix Genechip® data

• Affymetrix.
  • Whitepapers. Includes description of statistical algorithms
• Genelogic Workshop on Low Level Analysis of Affymetrix Genechip® data. Held in Bethesda, Maryland on November 19, 2001. Brief summary of papers and discussions.
• Expression Analysis. Commercial company offering processing and analysis of Affymetrix GeneChips.
• dCHIP.
• Genelogic data.
• Fred Wright's data.
• BrainArray custom CDF files for Affymetrix GeneChips.

Other Microarray Technology Resources

• BioChipNet. Information database on microarray technology. Natural and Medical Sciences Institute of the University of Tübingen, Transfer GmbH.
• BioMirror.
• Brown Lab. Pat Brown's home page at Stanford University. One of the pioneers of microarray research.
• Genome Chip. Basic information on DNA microarray technology and a list of academic and industrial links. Leming Shi.
• GenomeWeb. Large heirarchical directory of genome related links. Follow nucleic acids > gene expression to find the microarray links.
• GRID IT: Resources of Microarrays. A directory of resources on microarrays. Ruth Alscher, Virginia University of Technology.
• Institute for Genomic Research.
• Microarray Informatics at the European Bioinformatics Institute. Includes many data sets for download.
• EBI Microarray Discussion List. Archives of the list established by the European Bioinformatics Institute. Sangsoo Kim, Korean Research Institute of Bioscience and Biotechnology.
• Microarray.org. Information and tools.
• National Center for Genome Resources.
• National Institutes of Health.
  • Center for Information Technology.
    • Analytic Biostatistics Section.
  • National Human Genome Research Institute. 
  • National Institute on Aging.
    • NIA/NIH Mouse Genomics.
      • Mouse cDNA Project.
      • Database Search Engine.
• Stratagene. Universal reference mouse and human RNA.
• Y F Leung's Functional Genomics Page. Extensive resources on a number of topics including microarrays. Leung Yuk Fai, Chinese University of Hong Kong.

Conferences

• Bioformatics Conferences and Workshops. Heiko Schmidt, Deutsches Krebsforschungszentrum, Heidelberg.

• BioInfoSummer 2005: ICE-EM Summer Symposium in Bioinformatics, Centre for Bioinformation Science. The Australian National University, 28 November – 2 December 2005.
• 5th Australian Microarray. Novotel Barossa Valley Resort Adelaide, South Australia, 29th September – 1st October 2005
• Discovery Science & Biotechnology, Rydges Hotel, Melbourne, Australia, May 4-6, 2005
• BioInfoSummer 2004: AMSI Summer Symposium in Bioinformatics, Centre for Bioinformation Science. The Australian National University, 6- 10 December 2004.
• 4th Australian Microarray Conference. Esplanade Hotel, Fremantle, Western Australia, 30 September - 2 October 2004.
• Chips to Hits. The World Trade Center and Seaport Hotel, Boston, MA, September 20-22, 2004
• International Conference on Analysis of Genomic Data, Conference Center, Harvard Medical School, Boston, Massachusetts, USA, May 10-11, 2004.
• Statistical Methods in Microarray Analysis, Institute for Mathematical Sciences, National University of Singapore, January 2-31, 2004.
• Australian Mathematical Sciences Institute Summer Symposium in Bioinformatics, Australian National University, Canberra, December 1-5, 2003.
• Statistical Methods for Gene Expression: Microarrays and Proteomics. IMA, University of Minnesota, 29 September - 3 October 2003.
• 3rd Australian Microarray Conference, Couran Cove Resort, South Stradbroke Island, Queensland, July 23-26, 2003.
• RSS 2003. International Conference on Statistical Genetics and Bioinformatics, Limburgs Universitair Centrum, Diepenbeek, Belgium, July 14-17, 2003.
• 3 Day Workshop on Statistical Analysis of Gene Expression Data. Wye College Conference Center, Kent, United Kingdom, 11-14 July 2003. Organised by Sylvia Richardson (Imperial College) and Phil Brown (University of Kent)
• Computational and Statistical Aspects of Microarray Analysis. A short course presented by Anestis Antoniadis and Robert Gentleman, with one day for research papers by registrants. Milan, Italy, May 26-30, 2003.
• RECOMB 2003. The Seventh Annual International Conference on Research in Computational Molecular Biology, Berlin, Germany, April 10 - 13, 2003.
• Distributed Statistical Computing (DSC 2003), Technische Universität Wien in Vienna, Austria, March 20-22, 2003.
• 24th Lorne Genome Conference, Lorne, Victoria, Australia, February 16-20, 2003.
• Understanding the Genome: Scientific Progress and Microarray Technology, Genoa, Italy, November 29 - December 1, 2002.
• Lausanne Genomics Days, IIIe Cycle Romand en Sciences Biologiques, Lausanne, Switzerland, September 12-13, 2002.
• Second Annual Cambridge Healthtech Institute Microarray Data Analysis Conference, Washington DC,  September 10-11, 2002.
• 2nd Australian Microarray Meeting, Couran Cove Resort, South Stradbroke Island, Queensland, Australia, July 24-26, 2002.
• Workshop on the Design and Analysis of Microarray/Chip Experiments, Centre for Bioinformation Science, Australian National University, Canberra, July 12, 2002. Satellite workshop to the Australian Statistical Conference. [Sue Wilson and Glenys Noble.]